Protein Info for SMa0197 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 69 to 85 (17 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 212 to 238 (27 residues), see Phobius details amino acids 244 to 261 (18 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 42 to 303 (262 residues), 82.7 bits, see alignment E=1.3e-27

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to smk:Sinme_5390)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930U1 at UniProt or InterPro

Protein Sequence (315 amino acids)

>SMa0197 ABC transporter permease (Sinorhizobium meliloti 1021)
MNALIRQFGKPWVWSWLAAFIVWFLTIMVTGGAGTLGLSQAALTFAAFSVIVGIGQMFVI
TLGPGNIDLSVPATMTLAGTVALKLMNVENGMVLPGLLLAVFIGLGVGLCNYTLIKALRI
PPIIATLSMSFVVQSGAIWTNRGLRIKPPSVLAEFTTTNTLGVPNVAIVAVLISVLAWIL
LEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFCAVLASISGYLLACFSGGAALNM
GAEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFMFLVVSMLNTYGLGAGIRLIMTGLI
IISVIMLAGGRRGMR