Protein Info for SMa0101 in Sinorhizobium meliloti 1021

Annotation: amidohydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 PF07969: Amidohydro_3" amino acids 53 to 538 (486 residues), 462.8 bits, see alignment E=2.2e-142 PF01979: Amidohydro_1" amino acids 319 to 537 (219 residues), 27.4 bits, see alignment E=2e-10

Best Hits

KEGG orthology group: K07047, (no description) (inferred from 100% identity to sme:SMa0101)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930Z4 at UniProt or InterPro

Protein Sequence (541 amino acids)

>SMa0101 amidohydrolase (Sinorhizobium meliloti 1021)
MAFGIKADLILINGRIWRGREEGISEALAVWQGKILATGSDTDILGLKGPRTEVIDLEGR
FATPGLIDNHLHLIATGMAMGWVDATPASAPTLAALMGRISDRAATTPKGGWVRARGYDQ
VKLDTGRHPTRDDLDRVAPDHPVLLTRACGHVSIANSRALELAGITEATAVPEGGVIGVT
EGRLNGFLAENAQNLVKAAMPSATTEDLIDGIERAGRYLLSFGITSCMDAAVGQVSGFAE
IQAYEMAKLSGRLPVRVWLTLLGDPGVSIVEDCWRAGLLSGAGDDMLRVGGVKVFLDGSA
GGRTAWMTRPYRGEPDNIGVQMLPDAEVEAVVKACHDRGYQMVCHAIGDGAIEQLITAYE
KALAANPDPDRRHRVEHCGFSTPDQNARMKAAGILPAPQMAFIHDFGDSYISVLGEERGR
LSYPIGTWMRMGLKPSTGSDSPVCSPDPFPNLHAMLTRQTGKGTVMEASERLSRQEALQT
YTEYGAYSQKAEGVKGRLVPGQWADIAVFDNDLLAAPPETILSDTSCVLTLLAGRVVHDA
R