Protein Info for SM_b21252 in Sinorhizobium meliloti 1021

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF13692: Glyco_trans_1_4" amino acids 185 to 323 (139 residues), 82.2 bits, see alignment E=6.7e-27 PF00534: Glycos_transf_1" amino acids 200 to 338 (139 residues), 84.7 bits, see alignment E=8.7e-28 PF13524: Glyco_trans_1_2" amino acids 276 to 351 (76 residues), 34.1 bits, see alignment E=4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b21252)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92VF0 at UniProt or InterPro

Protein Sequence (365 amino acids)

>SM_b21252 glycosyltransferase (Sinorhizobium meliloti 1021)
MKIAFHAPLKSPDHPVPSGDRQMARMLIEALRVAGHDVGIASELRTFSREASDAAFSALR
KEAEREIARIRRLWQSKGPPDLWFCYHPYYKAPDLIGPALSADFSIPYVTAESSYSFRRN
LGAWKLAQDEVAAGARQAAVNICFTHRDREGLEAPIPEVRSALLAPFIDVSPFRDLRRTE
AGGNRLVAVAMMRTGDKMDSYRMLARALALVADVPWTLTVVGDGPARADVSEAFSAFPAG
RLDWLGERPPQAIPEILAGGDLYVWPGCGEAYGLSYLEAQAAGLPVVAQHTAGVPEVVRN
GETGYLTTAGDIDALAAALRHFLVDGTLRRQFGERARRFVFEQRSLPAAAARLSGIFAEF
VGSAK