Protein Info for SM_b21251 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 227 to 252 (26 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 361 to 379 (19 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 493 to 515 (23 residues), see Phobius details amino acids 521 to 540 (20 residues), see Phobius details PF21088: MS_channel_1st" amino acids 498 to 537 (40 residues), 23.9 bits, see alignment 5e-09 PF00924: MS_channel_2nd" amino acids 538 to 603 (66 residues), 52.6 bits, see alignment E=6.1e-18 PF21082: MS_channel_3rd" amino acids 609 to 696 (88 residues), 27.9 bits, see alignment E=4.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b21251)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92VF1 at UniProt or InterPro

Protein Sequence (738 amino acids)

>SM_b21251 hypothetical protein (Sinorhizobium meliloti 1021)
MHPSECTGLPCDAYVLICHYHRRVVWRSGGYRMGAGVGRVTAVFIFFLQLIFAPAAFSAA
QEPGAAPPAKVQQLFQLLDDPEVRHWIETRPGIETRQASPAPVAVTPPQSFASRWIAEAR
RHLTALLNAAPRVLPEWQAARDRVSGDMQSQGRLPIIWAFALVLLIGYGAEFLLRRLLRR
SASRNNAQSGSGLAAFVRIAPLIAFAIAAIAAFVIADWPSNLGAAVAPLLIAWIVARLLI
AIASAVLTPAISGRAATDQARSYVSLTPHSARYWLRRSVLFICTVAFAWAIGDMMRALAF
PEDVRNLTGAVLGLVVLGLAIDTTLRRPVAEMAPARRILRNALIVSFLILLWFFWVAGME
VLFWLGVYVLGLPPLLRFTSAATRTMLDAAAAEDFRVLRNVLIERGARLVIIALAAVWLA
MAFRINGAQMMQDDAFNRIFRGVLAGIVILLAADLVWHLAKESINVRMARASLTVQDSAE
LARNTRLRTLLPILRNFLAAFIAVVAGMMVLSGLGVEVGPLIAGAGVFGVAIGFGSQTLV
KDILSGVFYMMDDAFRVGEYIQSGSYKGTVESFSIRSVKLRHHRGPVFTVPFGSLGAVQN
MSRDWVIDKFMINVSYDADVAKVKKVVKGIGAALLDDPELGPLIIETVKMKGVEQFGDYG
ITLSFAMTTKPGHQTQIRRRAQAMIKDAFAANSIHFASPTVQVAGDEAQATAAAAATRDA
IAKKNAALAQGGGEAAAE