Protein Info for SM_b21078 in Sinorhizobium meliloti 1021

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 PF13439: Glyco_transf_4" amino acids 137 to 213 (77 residues), 30.6 bits, see alignment E=1e-10 PF00534: Glycos_transf_1" amino acids 229 to 379 (151 residues), 84.2 bits, see alignment E=2.4e-27 PF13692: Glyco_trans_1_4" amino acids 231 to 364 (134 residues), 74.6 bits, see alignment E=2.9e-24 PF20706: GT4-conflict" amino acids 292 to 343 (52 residues), 30.4 bits, see alignment 6e-11 PF13524: Glyco_trans_1_2" amino acids 305 to 393 (89 residues), 34.4 bits, see alignment E=6.3e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b21078)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92VP2 at UniProt or InterPro

Protein Sequence (402 amino acids)

>SM_b21078 glycosyltransferase (Sinorhizobium meliloti 1021)
MTDVGGARPVDQQSTRAKSALRHGCDVGGPALAAPIPNWRHDWTINGDFLGLRPTGVARY
AREVTLALDALMTERHPMTRGLQFSIVAPCEPPGDLPLKSIPVRVVPEYSRPRLPQFWVQ
AQLPFYVRGGLLSFCNLAPVAIRRQIVCIHDLHTRLMPQSYGRGFRLAHRLILPALGRRA
SAITTVSNFSRDHIAGFGVAPFEKVTVTYNGSDHVARWDAALSSIDLGQRPFVFCLGQSQ
KYKNVELLLKLAPALDRLGLDLCMAGDVDAALLKRLVPQQPSNLRLLGRISDDDLAKALS
HALCFLFPSRIEGFGLPAVEAMALGCPLVASTAPCLPEVCGDAALYAGPADAGSWISAVR
RLCNEDSLRRHLAEKGRERAATFSWRRIAEAYLLLIADIDLC