Protein Info for SM_b20815 in Sinorhizobium meliloti 1021

Annotation: outer membrane protein assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 PF05170: AsmA" amino acids 154 to 365 (212 residues), 93.7 bits, see alignment E=1.4e-30 PF13502: AsmA_2" amino acids 216 to 399 (184 residues), 82.4 bits, see alignment E=4e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b20815)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92VZ2 at UniProt or InterPro

Protein Sequence (555 amino acids)

>SM_b20815 outer membrane protein assembly protein (Sinorhizobium meliloti 1021)
MREVKAKKITARIESLAKPLRVAGRLQWRNKPVDVDLQIPAVDTILAGNLSAEGIPLKLQ
VKMPDANLSLDGKAALAGTYAGKLGFSTADLSAFLAGLGQSGAESIGPLAFNGHVDAGAT
GVSFQEASISVNSVEGAGSGSVEFTAPLKIMTALNFDELDLAQLAGAQSPALQAKAATGA
EPADVPLDLSALRSIDATIKVNAKKLGYGKVFAGPVATSLVVSDGVASLTLPEAPFYGGH
VVASLRADSSQSEPSIALKTSISGASAAPLLTDMAGFKHLEGSLKAEFDVTGAGRTSGAL
AKSLQGNANVGFSDGAIRGIDIANVYNNLVSLMTSGFKQDESKATTFTELGASFAIEGGV
ARTEDLKLVGPLIRMTGNGAADLAQSTLNFRLEPRLVASLKGQGAEISTDGIGVPVVVEG
SFAAPRIYPDLSDLLKNPDAALAKLKDFGLPIDKLHIGDLLNEDGAGAAVKDLLGGTLDK
ALKDKAFKQEEQQLSIEEIIGGDPAPKPDEAAVEIPTNEEAAKADAPTEQPANGTEVPSE
EADGPMEGFFKQLLR