Protein Info for SM_b20725 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 89 to 116 (28 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details PF07331: TctB" amino acids 20 to 154 (135 residues), 81 bits, see alignment E=4.7e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_4302)

Predicted SEED Role

"Tricarboxylate transport protein TctB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92TR8 at UniProt or InterPro

Protein Sequence (163 amino acids)

>SM_b20725 hypothetical protein (Sinorhizobium meliloti 1021)
MNKGNNPSADTRRPDRAALVIAAVLAAIAGVIFWDVSRLSGLAGYSQVGPMTVPYAIACC
LIALAVWTAVEAWRGDFPEREHQRAGPVVWIVAGLAAQMLLLNTLGFSIATGILFALTAR
GFGKRKLWLTVPIGIVFSFIVWAIFAKLLQLSLPAGPLERLFF