Protein Info for SM_b20598 in Sinorhizobium meliloti 1021

Annotation: replication protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details TIGR03453: plasmid partitioning protein RepA" amino acids 22 to 418 (397 residues), 652.1 bits, see alignment E=1.2e-200 PF13614: AAA_31" amino acids 133 to 311 (179 residues), 125 bits, see alignment E=9.8e-40 PF06564: CBP_BcsQ" amino acids 133 to 299 (167 residues), 36.7 bits, see alignment E=1.1e-12 PF09140: MipZ" amino acids 134 to 172 (39 residues), 31.1 bits, see alignment 4.7e-11 PF01656: CbiA" amino acids 135 to 380 (246 residues), 84.2 bits, see alignment E=2.3e-27 PF02374: ArsA_ATPase" amino acids 141 to 276 (136 residues), 28.9 bits, see alignment E=2.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_4233)

Predicted SEED Role

"Plasmid replication protein RepA" in subsystem Plasmid replication

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92TK2 at UniProt or InterPro

Protein Sequence (418 amino acids)

>SM_b20598 replication protein (Sinorhizobium meliloti 1021)
MTAAAATTAGATGGASRRPADEAIAADARALSEQLKAMRDRLFAPTAMKTLRSFTSGEAA
KLIGVSDGYLRQLSLAGEGPQPDTGAGGRRSYSLSDINALRRHLAEQAIAKGNGAKARGY
LKWRDAARSEHLQVISVTNFKGGSGKTTSSVHLAQYLALTGHRVLAVDLDPQASLSALFG
YQPELDLTGNDTLYGAIRYDAEARPLKDIIRKTYFDGLDLVPGNLELQEFEHTTPQALSA
RQSGADAGPLFFARVQAALASVADDYDVVVIDCPPQLGYLTLSALCASTSVIVTVHPQML
DVASMNQFLYMTSDLLSVVRDAGGELNFDFLRYLVTRFEPNDGPQAQIVGFMRSLFGDRV
LTSAMVKSTAISDAGLTKQTLYEVGRENFTRATYDRAIESLNAVNGEIEALIHAAWGR