Protein Info for SM_b20542 in Sinorhizobium meliloti 1021

Annotation: protein in ISRm14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 PF05717: TnpB_IS66" amino acids 10 to 105 (96 residues), 114.7 bits, see alignment E=8.1e-38

Best Hits

Swiss-Prot: 44% identical to Y4JC_SINFN: Uncharacterized protein y4jC (NGR_a03130) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 98% identity to avi:Avi_9622)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7ANR6 at UniProt or InterPro

Protein Sequence (117 amino acids)

>SM_b20542 protein in ISRm14 (Sinorhizobium meliloti 1021)
MIVAGQRLPILIATRPVDFRCGHQALALMVQTELKLDPHSGVTVIFRSKRGDRLKILVWD
GTGMVLTYKILEHGSFAWPKVQDGTMRLSRGQYEALFEGLDWRRVMAQRVTAPSAAG