Protein Info for SM_b20415 in Sinorhizobium meliloti 1021

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 152 to 170 (19 residues), see Phobius details amino acids 311 to 333 (23 residues), see Phobius details amino acids 349 to 371 (23 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details amino acids 409 to 426 (18 residues), see Phobius details PF01370: Epimerase" amino acids 4 to 153 (150 residues), 52.5 bits, see alignment E=7.3e-18 PF13460: NAD_binding_10" amino acids 8 to 148 (141 residues), 58.7 bits, see alignment E=1.1e-19 PF13781: DoxX_3" amino acids 322 to 419 (98 residues), 68.5 bits, see alignment E=1e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b20415)

Predicted SEED Role

"FIG01076270: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WD9 at UniProt or InterPro

Protein Sequence (429 amino acids)

>SM_b20415 oxidoreductase (Sinorhizobium meliloti 1021)
MTRVLVVGASGLIGSAVCAGLHGRGSEIVRVVRPGSAPSSHTAGKALELDLRSVGPEDWL
PHLSGIDAVVNCAGTLQDGPGEDTTAVHARGPASLFKACEQAGVRRVIHFSAMGVDRAQP
SPFSRTKLQGDEALMACDLDWVILRPSVVLGPGAYGASALFRGLAALPWLPVMPNTGLLQ
VVRLEDVVRTVEMFVKPNAPSRLTLEVAGPEALSFKDVVGTYRRWFGWPAARVVNMPTPL
ANLTYKLSDIAGALGWRPPTRSTAQKEIGRGAVGDNRAWVEKTGIEPAALADTLARTPVS
VQERWFAKLYLLKPVIFVVLPLFWITTGVISLTSGYEIGVDLMERGGAGVLAGPSVIAGA
LADILIGMAIAFRRTSRIGLYGAVGLSLFYAIAGTALLPELWNEPLGPLLKIWPILVLHL
AALAILEER