Protein Info for SM_b20409 in Sinorhizobium meliloti 1021

Annotation: 3-oxoacyl-ACP reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00106: adh_short" amino acids 10 to 214 (205 residues), 152 bits, see alignment E=2.3e-48 PF08659: KR" amino acids 11 to 183 (173 residues), 39.7 bits, see alignment E=7.4e-14 PF13561: adh_short_C2" amino acids 18 to 273 (256 residues), 148.8 bits, see alignment E=3.1e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b20409)

Predicted SEED Role

"Small Molecule Metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WE5 at UniProt or InterPro

Protein Sequence (276 amino acids)

>SM_b20409 3-oxoacyl-ACP reductase (Sinorhizobium meliloti 1021)
MTGRLKGRSAVITGGLTGQGLAIAEALAAEGANVAVGSFVREAAGRGGDAAAYPDPQEIV
EVRERFAAAGTAVYAGHLDVRDSEAIEQFVSAAEAACGPADILVNAAGTTAEQPVAGHSD
ELWLKIIDTNLNGAFRMTRRLLPGMIGRKWGRIINIGSTAATVGWKDNPAYCASKSGLLG
LTRCVALEGAPHGVTCVMISPTWVETELMRRNVQQVVEREGRGRTMEEAMSDIAAQNPQN
RIIQPYEIAALAAFLCGEGARGITMENIQITGGALW