Protein Info for SM_b20402 in Sinorhizobium meliloti 1021

Annotation: alcohol dehydrogenase cytochrome c subunit precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details amino acids 25 to 26 (2 residues), see Phobius details transmembrane" amino acids 24 to 24 (1 residues), see Phobius details PF00034: Cytochrom_C" amino acids 46 to 145 (100 residues), 23 bits, see alignment E=1.7e-08 amino acids 336 to 416 (81 residues), 26.8 bits, see alignment E=1.1e-09 PF13442: Cytochrome_CBB3" amino acids 337 to 415 (79 residues), 34.9 bits, see alignment E=1.6e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b20402)

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q926H9 at UniProt or InterPro

Protein Sequence (462 amino acids)

>SM_b20402 alcohol dehydrogenase cytochrome c subunit precursor (Sinorhizobium meliloti 1021)
MRALRVAIGIAAVILVAAAAFFLFAWRSEIPEDTTAAEARFAAELVAKGAQLAALGNCIA
CHTVPGRPAFAGGLALPTPFGTIYSTNITPDRETGIGGWSEAAFERAMREGVDREGSHLY
PAFPYEHFTRVSADDNRALYAFLMTRVAVKAEALENDLPFPLKFRPLLAGWKLLFLDSGE
REPDPGQSDAWNRGRYLAEGLGHCGACHTPRNPFGAEDRDRHFGGGEAEGWQAYAINTES
KAPIPWDEQSLAFYLRNGWHEFHGVSRGPMAEVTGNLAFLPDSDIAAIATYVRSIMGAPT
PEREQRAAQLREAFEGQRPEQAADSQRSPVSASGSQPGEAIYLAACASCHEGGRRQPFGG
LNFELSTAVNAPNPQNIVNVVLFGLPPADGEASAVMPAFRHLLNDQQVADLLAYMRERFS
EEPPWAGLVEQTARTRSGTYKVAVRPSDGIERAPHHVGAEED