Protein Info for SM_b20369 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 277 to 299 (23 residues), see Phobius details amino acids 327 to 351 (25 residues), see Phobius details amino acids 372 to 395 (24 residues), see Phobius details PF12704: MacB_PCD" amino acids 19 to 252 (234 residues), 66.5 bits, see alignment E=4.3e-22 PF02687: FtsX" amino acids 282 to 405 (124 residues), 74.7 bits, see alignment E=6.5e-25

Best Hits

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 100% identity to sme:SM_b20369)

Predicted SEED Role

"Lipoprotein releasing system transmembrane protein LolC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WI4 at UniProt or InterPro

Protein Sequence (413 amino acids)

>SM_b20369 hypothetical protein (Sinorhizobium meliloti 1021)
MRLIFDIALTHVAGRGRQTLVAVIGVAVGVGFSIAMAALMQGGQDDFVRQLVDTMPHVDV
TDEQRSARRQPAEDLFEAVAISGLRPRDDRRGIINPTKAASWLEEWMPGRLAAVLNVQGV
IRYSGREVGAVVIGIEPEKEVKVSHIVEDFESGSFAALAAGGNNVVIGDTMASRLGAGLG
DTITAVSSEGLARNFKIVGLFHTGTTARDEGEAYVLLKNAQILSNRPNAINEIRIKLDDP
NAAPTIARRVEAELGYKTVAWQEANESILEALVVRNVIMYTVVAAIMLVAGFGIFNIVST
ITHEKARDIAIMKSLGFSQADMRRLFVMEGLAIGIAGSLLGWALGFAITYALSRVRFEIA
ATGQEMTRLPIAWSILHYAVATAFALSSAAVAGYLPARRAARVNPVDIIRGAT