Protein Info for SM_b20345 in Sinorhizobium meliloti 1021

Annotation: efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details amino acids 396 to 416 (21 residues), see Phobius details amino acids 436 to 460 (25 residues), see Phobius details amino acids 472 to 495 (24 residues), see Phobius details amino acids 530 to 552 (23 residues), see Phobius details amino acids 865 to 884 (20 residues), see Phobius details amino acids 891 to 910 (20 residues), see Phobius details amino acids 916 to 935 (20 residues), see Phobius details amino acids 966 to 985 (20 residues), see Phobius details amino acids 991 to 1015 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 14 to 1015 (1002 residues), 579.1 bits, see alignment E=8.2e-178

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SM_b20345)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WK8 at UniProt or InterPro

Protein Sequence (1049 amino acids)

>SM_b20345 efflux protein (Sinorhizobium meliloti 1021)
MHASTEDKKPFNLSRWAIGHPSIARFLLALIIITGGLGLLRMGQREDPEFTFRVMVVQAV
WPGASIQEMEDQVVNKIERKLQETPHLDFVRSYTRAGSAIITVQIEGDTNADEVADAFYQ
VRKKVGDIANELPEGVLGPYFNDEFGDTFITLHSISGDGFSYPELKRFAIEGRDMLLATP
GVEKVVVLGDQPEKIYIDLSSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSVRIS
VEGDVTKVEDIRELRLRAGDRTIRLGDIATVTSGLEDPYARKFRFNGHDSVQIGVVMAKG
FNVTDVGKAVEATYDRFESALPYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSF
LSIGWRSGLVIAIAIPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEMME
RKLEEGLEKIDAASFAYSSTAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIAL
VVSWFVAVYFTPWLGYMILKQRHHAGTHHDVFDTRFYRRLRTTVGWAVRHRVVVLLMTLA
IFVTSLWAFQFIPKNFFPQSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMDDEDKRFI
ATYIGEGAPRFFLPLDQQLRNPNFAQLLVMAKDEPARERLIAKLRTILAEDFPSIRAKVD
RLFLGPPTGWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLEPVPAMKLVID
QDRARALGITSQRIRQMLQAAMSGVPLDSFRDGEETVSIMAREPGGNRHLLSAVQSVYVP
TDFGGFVPVSQIAKVVPVMEQGIEWRRDRLPTITVRGTLPDGVQPNDVAMQLFDELKGLR
DGLAPGYKVEIQGGAEDSAESQASIAAKAPIMLVVIVILLMVQLQHFGKAMLVLATGPLG
IIGAAAALLISGAPFGFVAILGVIALLGIIIRNSIILVDQIDQDIAAGMERSEAIIGAAV
RRFRPIILTALTAVLALIPISRGVFWGPLAYAMMGGILVATVLTILVLPAGYALFFGKEP
KSRKTDPEPLAAQDNADEQEHYSTPLAAE