Protein Info for SM_b20272 in Sinorhizobium meliloti 1021

Annotation: transporter protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 8 to 33 (26 residues), see Phobius details amino acids 41 to 64 (24 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 100 to 100 (1 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details amino acids 134 to 158 (25 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 338 to 362 (25 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 355 (339 residues), 180.8 bits, see alignment E=5.6e-57 amino acids 269 to 395 (127 residues), 54.3 bits, see alignment E=1.6e-18 PF12832: MFS_1_like" amino acids 37 to 366 (330 residues), 30.7 bits, see alignment E=2.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_3901)

Predicted SEED Role

"Oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WR7 at UniProt or InterPro

Protein Sequence (402 amino acids)

>SM_b20272 transporter protein (Sinorhizobium meliloti 1021)
MIDAHYRWVIVAAGGLLGCIAIGAMFSLPVFLVPISRDTGWSVTGISSAMTVGFIAMALA
SMVWGSASDRWGPRSVVLIGSALLAASLALSSLVTSLIAFQLVFGVVVGGACAAIFAPMM
ACVTGWFDTHRSLAVSLVSAGMGMAPMTMSPLAGWLVTIYDWRTSLQIIAALAAVTMIPA
ALLLRRPPVLEDTNAVSASEGQPDMSLGQALRSPQFVILLLTNFFCCATHSGPIFHTVSY
AVSCGIPMMAAVSIYSLEGLAGMGGRVAFGVLGDRYGAKRILVSGLLLQAFGALAYFFVR
DLGAFYAVAAVFGFIYAGVMPLYAVIARENFPLRMMGTVIGGTAMAGSLGMAIGPVAGGL
IYDVFASYGWLYIGAWGLGIGAFLIALTFKPFPRERPALAAA