Protein Info for SM_b20179 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03866: PQQ-dependent catabolism-associated beta-propeller protein" amino acids 13 to 323 (311 residues), 529.6 bits, see alignment E=2.2e-163 PF10282: Lactonase" amino acids 46 to 125 (80 residues), 30.7 bits, see alignment E=5.1e-11 amino acids 180 to 304 (125 residues), 22.6 bits, see alignment E=1.4e-08 PF21783: YNCE" amino acids 67 to 159 (93 residues), 28.1 bits, see alignment E=3.3e-10 amino acids 186 to 320 (135 residues), 29 bits, see alignment E=1.7e-10 TIGR02276: 40-residue YVTN family beta-propeller repeat" amino acids 103 to 144 (42 residues), 54.6 bits, see alignment 8e-19 amino acids 288 to 321 (34 residues), 42.7 bits, see alignment 4.4e-15

Best Hits

KEGG orthology group: None (inferred from 99% identity to smk:Sinme_3986)

Predicted SEED Role

"FIG01075159: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92WY3 at UniProt or InterPro

Protein Sequence (324 amino acids)

>SM_b20179 hypothetical protein (Sinorhizobium meliloti 1021)
MLRPALAIVSAVLLSAGSAEANKVFVSNERGNNITVLDSESWEVIATFPAGNRPRGITIS
PDGKELYVCASDDDTVRVFDPETYKELHTLPSGPDPELFALDPSGNPLYIANEDDNLVTV
VDVKTRQVLAEVPVGVEPEGVAVSPDAKTIINTSETTNMAHFIDASTYKIVHNVLVDQRP
RYAEFTADGKKLYVSAEIGGTVSVIDVSAAEPKITKKITFEVPGVLPEWLQPVGVKATKD
GSRIFVALGPANRVAVIDGKTDEVLDYFLVGQRVWQMAFTPGEEFLITTNGNSNDVSIID
VKAEKVIRSVQVGEQPWGVVVAPD