Protein Info for SM_b20155 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 616 transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details amino acids 341 to 365 (25 residues), see Phobius details amino acids 412 to 434 (23 residues), see Phobius details amino acids 449 to 470 (22 residues), see Phobius details amino acids 476 to 495 (20 residues), see Phobius details amino acids 539 to 562 (24 residues), see Phobius details amino acids 582 to 602 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 120 to 317 (198 residues), 60.2 bits, see alignment E=1.2e-20 amino acids 424 to 602 (179 residues), 30.8 bits, see alignment E=1.2e-11

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to sme:SM_b20155)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92X07 at UniProt or InterPro

Protein Sequence (616 amino acids)

>SM_b20155 ABC transporter permease (Sinorhizobium meliloti 1021)
MALLSEPAKAAAAETRSAAPSAWQAWRYRLKVALREPTTLIGVLTALLFTYLIVVPIISI
VLDAVRVQFGHERRLSKDVGDLTLNYLDRALFSPVSADLFWRPLFNTLSVAVGAISLSLL
VGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQPGWLEATGL
TPPDWLAYGQFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAKRHQVALQIIL
PLMRPALLSSMVLIFAKCLGEFGVPYVLGLPVKFEVLSTSLFRSIASRQTGVAGVIAGSI
MLIGIITLWIDARLVREARRFVTIGSKGSMNRQSRLGRMRLPAAGFAATVFLLSVGLPLL
TLLLSTVMKMPARFTLDNFTLDYWIGRDLDTIALKTGILLSSDLWTAARNTLTIVGIASV
TSGILGLLVGYVVIRTPVRLLSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPLPALYG
TVVILVLALIADQMPYASRAGISAMTQLGKDPEEAAQVAGAGWLRRMISIVIPIQKGSLV
TGVLLPFISGIKGLSLFVILAVPSTDVLTTYSLRLVDYHYTQAANAVVLIIAAIAYCGTL
IAQKLTRTNLAEGLGS