Protein Info for SM_b20054 in Sinorhizobium meliloti 1021

Annotation: non-heme chloroperoxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 PF00561: Abhydrolase_1" amino acids 24 to 255 (232 residues), 105.7 bits, see alignment E=6.5e-34 PF12146: Hydrolase_4" amino acids 25 to 123 (99 residues), 47.3 bits, see alignment E=3.3e-16 PF12697: Abhydrolase_6" amino acids 25 to 266 (242 residues), 73.5 bits, see alignment E=8.4e-24

Best Hits

Swiss-Prot: 64% identical to PRXC_PSEFL: Non-heme chloroperoxidase (cpo) from Pseudomonas fluorescens

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_4119)

Predicted SEED Role

"Non-heme chloroperoxidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92XA8 at UniProt or InterPro

Protein Sequence (275 amino acids)

>SM_b20054 non-heme chloroperoxidase (Sinorhizobium meliloti 1021)
MATITTRDGTRIFYKDWGSRNAQPILFSHGWPLTADVWDAQMVFFANKGYRVIAHDRRSH
GRSDQVWDSNTMDRYADDLAELIEALDLRSVILVGHSTGGGEVTRYVGRHGTGRVAKVAL
IGAVPPLMLKTEANPGGLPIDVFDGIRKGTYDNRSQFFRDLTIPFYGYNREGAAISEGIR
ESFWLQGMMGGLKGQLDSIRAFSESDFNADLAKFDKPTLVLHGDDDQIVPIGASALSTVK
IVKHAVLKVYEGADHGLTQTYQDRFNADLLEFIET