Protein Info for SM_b20025 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03401: TctC" amino acids 46 to 320 (275 residues), 242 bits, see alignment E=3.2e-76

Best Hits

Swiss-Prot: 55% identical to YTUY_AGRVI: UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region from Agrobacterium vitis

KEGG orthology group: None (inferred from 99% identity to smk:Sinme_4145)

Predicted SEED Role

"Tricarboxylate transport protein TctC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92XD4 at UniProt or InterPro

Protein Sequence (325 amino acids)

>SM_b20025 hypothetical protein (Sinorhizobium meliloti 1021)
MKILNALLGAATAVSLFAASASAQTYPERTITMVVPFSAGGPTDTVARLVAESMSKDLGQ
QIIVENVGGAGGTLGAGRVAQADPDGYTLLLHHIGMATSATLYRKLAYDTLNAFEYVGLV
TEVPMTIVARKDFEPTDLKGLIEHVKANKDTVTVANAGIGAASHLCGMMFMSAIETPLTT
VPYKGTGPAMTDLLGGQVDIMCDQTTNTTKQIQGGTIKAYAVTSPQRLKIFPDLPTAEEA
GLSGFQVGIWHGIYAPKGTPAEVTDRLSKSLQKALKDENVVARFGELGTEPSSEADATPA
ALKAKLESEIGRWKPVIEAAGQYAD