Protein Info for SGL_RS18275 in Synechocystis sp000284455 PCC 6803

Annotation: cyclic nucleotide-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 54 (24 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details PF00027: cNMP_binding" amino acids 139 to 218 (80 residues), 77.8 bits, see alignment E=2.5e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to syn:slr0593)

Predicted SEED Role

"cAMP protein kinase regulatory chain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>SGL_RS18275 cyclic nucleotide-binding domain-containing protein (Synechocystis sp000284455 PCC 6803)
MTAFLQGILGASSMALGALIAVAWQPGRKFLAAVMAFGSGTLMAAIALEIASAVYRSGGV
LVLVGGFLLGGILFISLSKYIDEQGGFLRKPAASRRYVVEHKMLESHELVDYLAHSEVMN
ALPEQERHQLAGLLTPHHAYPREVLCREGDQGDYFYFIGGGEADVYKGTTWVNRLTSGDI
FGEMSLLTGEPRSATVVAVTPMELYQLDKENFANILSQSPHLALALSRKLARRLQSATDF
EAIVPPEDKVSVLEPLVEGDRQMLAKLAQSSAPMAILVGTLFDNIPEAMVIGMNTNVTPW
GGAFLFAVFISNFPEALSSSFGMKQAGISNRRILTLWFGAVVASGLIAMVGYSIGQGGTL
LLVAVAQAIAGGGILAMLASTMMPEAYELGGSSVAYATIIGFLAGFLISASHF