Protein Info for SGL_RS17670 in Synechocystis sp000284455 PCC 6803

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details PF13432: TPR_16" amino acids 66 to 122 (57 residues), 30.2 bits, see alignment E=3.3e-10 amino acids 135 to 196 (62 residues), 39.1 bits, see alignment E=5.1e-13 amino acids 170 to 219 (50 residues), 26.9 bits, see alignment 3.4e-09 PF13414: TPR_11" amino acids 74 to 109 (36 residues), 29.8 bits, see alignment 2.5e-10 amino acids 136 to 177 (42 residues), 31.5 bits, see alignment 7.6e-11 amino acids 171 to 211 (41 residues), 46.4 bits, see alignment 1.7e-15 PF07719: TPR_2" amino acids 95 to 126 (32 residues), 25.7 bits, see alignment 5.4e-09 amino acids 164 to 196 (33 residues), 33.6 bits, see alignment 1.6e-11 PF00515: TPR_1" amino acids 95 to 126 (32 residues), 28.1 bits, see alignment 8.4e-10 amino acids 132 to 161 (30 residues), 29.9 bits, see alignment 2.3e-10 amino acids 164 to 196 (33 residues), 42.7 bits, see alignment 2e-14 PF13181: TPR_8" amino acids 96 to 126 (31 residues), 13.8 bits, see alignment 3.7e-05 amino acids 132 to 161 (30 residues), 24.4 bits, see alignment 1.4e-08 amino acids 163 to 195 (33 residues), 28.1 bits, see alignment 9.6e-10 PF14559: TPR_19" amino acids 141 to 184 (44 residues), 29.3 bits, see alignment 5.7e-10 PF13431: TPR_17" amino acids 152 to 184 (33 residues), 27.5 bits, see alignment 1.6e-09 PF13174: TPR_6" amino acids 165 to 195 (31 residues), 21.4 bits, see alignment 2e-07

Best Hits

Swiss-Prot: 100% identical to Y751_SYNY3: TPR repeat-containing protein slr0751 (slr0751) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 100% identity to syn:slr0751)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>SGL_RS17670 tetratricopeptide repeat protein (Synechocystis sp000284455 PCC 6803)
MKVNLGNCFCLSLSQKKFPLPLASLLVNVPLALMVALGMNLALERPGVTGEMVVLESPIA
PEAIFAQGVKAGEAGNYAEAVELFSVVLNLSPDSPETHYNRGLAWERLGNVDQAIADYGR
SIALDRYYIPPYINRGNLYSQQQDHHTAIQDFTQAITYDPNRYKAYYNRANSYFQLGQYA
QAIADYNRVLVLRPDYINAIYNRGLAHFQAGQLDSSRQDLLFSAQAYLNRGDRRSYLEAL
DQMSELGL