Protein Info for SGL_RS16065 in Synechocystis sp000284455 PCC 6803

Annotation: CusA/CzcA family heavy metal efflux RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 342 to 362 (21 residues), see Phobius details amino acids 368 to 392 (25 residues), see Phobius details amino acids 395 to 404 (10 residues), see Phobius details amino acids 446 to 467 (22 residues), see Phobius details amino acids 479 to 505 (27 residues), see Phobius details amino acids 537 to 561 (25 residues), see Phobius details amino acids 573 to 591 (19 residues), see Phobius details amino acids 867 to 887 (21 residues), see Phobius details amino acids 894 to 941 (48 residues), see Phobius details amino acids 966 to 985 (20 residues), see Phobius details amino acids 997 to 1020 (24 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 6 to 1021 (1016 residues), 830.3 bits, see alignment E=1.2e-253 PF00873: ACR_tran" amino acids 9 to 1023 (1015 residues), 1181.6 bits, see alignment E=0 PF03176: MMPL" amino acids 816 to 1032 (217 residues), 40 bits, see alignment E=3.7e-14

Best Hits

KEGG orthology group: K11326, cation efflux system protein involved in nickel and cobalt tolerance (inferred from 100% identity to syn:slr0794)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1054 amino acids)

>SGL_RS16065 CusA/CzcA family heavy metal efflux RND transporter (Synechocystis sp000284455 PCC 6803)
MLNTLLNQILKTSIAQRWFIVIAAIGITLWGIISVGQMPLDVFPEFAPPQVDIHTEAPGL
APEEVETQITVPIESAVNGLPGVTTVRSSSKVGLSMVSVVFDQDADVYKARQTVTERLQQ
VTNQLPEGSHPPEISPLVSPLGTIVQYAFTIKDGGSSNLMDLRRLLETTVGNQLLSVPGV
SQVTLYGGDERQEQVLVDPAKLRALKVSLNEVTQASAEANSNAPGGFLIGGGQELLVRGL
GQMQSIEDLRRSVVKVVDGKPILLEDVAEVKTGSALKRGDGSFNGQPAIVMMVNKQPDVD
TPTVTKAVEAVVESLKPTFPADVQIAQTFRQANFIDSAIRNVSTSLLEGIVIVSVIMLIF
LMNWRTAAITLTAIPLSLLIGLMFMKAWGLGINTMTLGGLVVAIGSVVDDSIVDMENCYR
GLRTNQAEGNPKHPLRVVYETSVEVRLAVIFSTVIIVVVFAPIFSLTGVEGRIFAPMGLA
YLLCIGASTLVAMTVSPALCGILLANQRLPQEGTFVSRWAERLYRPLLNFSLRAPQVILS
IALIAVIASVSLVPSLGRVFLPEFREKSMVNSMVLFPGVSLDMTNRAGMALFNNLKDNPL
YEWVQIRAGRAPGDADGAGVSMAHVDVELSDEALKDREASVKELRKAFNQLPGVASNMGG
FISHRMDEVLSGVRSAIAVKIFGPDLKELRAIGEQVQEAMKTVPGIVDLQLEPQLPIRQV
QIHYDRAAAAQYGLRMADISAVVETALNGRIVSQVPEDQQLVNVVVMLPETERNSLDAMG
AIPISTPTGQMITLGDVAKIDYGMGANVVNREDVSRLIVVSANVAERDLGSVVEDVQAQI
KEKVQLPQGYFIEYGGQFESEQRATNSLLLFSFVAALVIGILMFFSVKSLPATIAIMINL
PLALIGGLLSVVFTGGVISIASLVGFITLFGVAVRNGLLLVDNYNQKFAQGMKLKETIFK
GSMERVNAILMTALTSALGMLPLATASSAGNEILQPLAIVVLGGLCTSTALTLLVLPALY
AKFGKWLMPKQPTNGDHIAPFVRNDRVSTQKSHF