Protein Info for SGL_RS15830 in Synechocystis sp000284455 PCC 6803

Annotation: YihY/virulence factor BrkB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 13 to 33 (21 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 161 to 187 (27 residues), see Phobius details amino acids 208 to 232 (25 residues), see Phobius details amino acids 241 to 265 (25 residues), see Phobius details amino acids 284 to 308 (25 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 36 to 305 (270 residues), 165.5 bits, see alignment E=9.9e-53

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 100% identity to syn:slr0119)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>SGL_RS15830 YihY/virulence factor BrkB family protein (Synechocystis sp000284455 PCC 6803)
MGNNFAQLKRLINFFRTVILPARISQLILQTFLKWQKDNCMDMGAALAYYALFSLFPICL
VMLSIAGRLLGADSNYYLQLISFAQNILPEQPFKVFQQALTNLNQSSFSAGLIGFGILVL
TASRIFDALNQSVKKIWSVVHQPKENIGVKHHAFNFIRNKILAFLLVLSTVMVFLLSIFA
NLAAKIFLTVLAEFGQSIPWVTFDSLGLITTLQTSISYFLITVVIITLFKVLPPVRLQWW
DIFPGAILTAATMMALQNAVGSGIIRIGENLQAYGVVGNVMVLLLWIYLIFQVFFIGCEF
TFVFTYIFGSRHQKEKPF