Protein Info for SGL_RS13110 in Synechocystis sp000284455 PCC 6803

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 PF00005: ABC_tran" amino acids 20 to 163 (144 residues), 105 bits, see alignment E=7.8e-34 PF13304: AAA_21" amino acids 137 to 195 (59 residues), 27.1 bits, see alignment E=6.5e-10 PF13732: DUF4162" amino acids 217 to 312 (96 residues), 33.6 bits, see alignment E=7.8e-12

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 100% identity to syn:sll0759)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>SGL_RS13110 ABC transporter ATP-binding protein (Synechocystis sp000284455 PCC 6803)
MGVAVQVKQLRKKYGAIPAVKDISFAVPRGEIFGLLGPNGAGKTTTIRCLCTLAKPDGGE
LWIDGVNVLSDPRQARRRLGYVAQEVAIDKILTGRELLQLQASLYHLDAISSQKRIDQLL
DILGLTAYADQKTGTYSGGLKKRLDLAAGLLHQPTVLVLDEPSVGLDIESRFILWEFLRQ
LRDAGTTVVITSHYLEEIDALADRLAIIDQGTVIATGTPTELKDRVGGDRVTLRIKEFTA
DQEAEKASQILRSLAFVQEVIVNQAQGNSLNLVVTPQSNPLSQIEKALLADGLPIFSLAQ
SRPSLDDVYLAATGKTLMDADLAAAAQRDLKAEKKQAMKAS