Protein Info for SGL_RS12330 in Synechocystis sp000284455 PCC 6803

Annotation: IS5 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 transmembrane" amino acids 40 to 56 (17 residues), see Phobius details amino acids 135 to 151 (17 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details PF13340: DUF4096" amino acids 11 to 83 (73 residues), 106.6 bits, see alignment E=9.1e-35 PF01609: DDE_Tnp_1" amino acids 101 to 255 (155 residues), 99.6 bits, see alignment E=3.1e-32 PF13586: DDE_Tnp_1_2" amino acids 177 to 257 (81 residues), 42.9 bits, see alignment E=8.1e-15

Best Hits

KEGG orthology group: K07492, putative transposase (inferred from 100% identity to syn:sll1860)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>SGL_RS12330 IS5 family transposase (Synechocystis sp000284455 PCC 6803)
MIIREFYSTDITDSQWQLVEPHLPKAKTGGRKRKTSLREILNAIFYMLRTGCAWRLLPHD
FPKWRTVYGYFQPWHEDGTWKKLNRIFREKVRLKAGRNTHPSAGCLDSQSLKKAGTGQET
GYDGGKKVNGRKRTILVDTMGLLLDVVVHGAHRSDHQGLILLATWFAPLWQCLQVIWTDS
TFGGKDFIYWVEHTFGWNLNVVSKKQGQKGFEVLPRRWVVERTFAWFGRYRRLSKDYEYL
PTTSETMLYVAMVHLMLQRLA