Protein Info for SGL_RS11060 in Synechocystis sp000284455 PCC 6803

Annotation: sodium:solute symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 43 to 61 (19 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 121 to 146 (26 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 228 to 248 (21 residues), see Phobius details amino acids 269 to 294 (26 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details amino acids 370 to 390 (21 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details amino acids 428 to 448 (21 residues), see Phobius details amino acids 454 to 475 (22 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 33 to 435 (403 residues), 243.9 bits, see alignment E=1.6e-76 PF00474: SSF" amino acids 33 to 434 (402 residues), 167.5 bits, see alignment E=2.3e-53

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 100% identity to syn:sll1087)

Predicted SEED Role

"sodium-solute symporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>SGL_RS11060 sodium:solute symporter (Synechocystis sp000284455 PCC 6803)
MGMIDWAIVLVYSAIVIAIGAIASRKQDNTDEYFRGAKQIPWWALGFSIIATSFSAASLL
GGPGEGYGHGFLYLQLQLGDLIGYGLVIAVFLPFFVRLNLTTAYEYLERRFDAKTRSLGS
LCFLLFVIARLGGLLYAAALVLSVLTGISTNTAILMVGVVSIIYTVAGGITAVVWTDVLQ
FGMIFVGLGAGIWAAVTAVPGGFGELWRIAGENGKLVVFNFDWDPASIRSLPTALIAYGI
LAFAVAGTNQQSVQRYVSCADEQSARKAIFLGWFSGVLGVGATLLLGVLLFSFYQLQGGL
PGNIKPDEILSYFIVNQVPPGASGFLVAAIFAAAMSSIDSALHSLATCMTVDFYDRYINI
QASEMRSVRVAQGLIIVWGVVAIFSAIYAASTGQDLLEFLVSYTTMFLGPLLGIFLMGVL
FPRINALGAFYGTVAAVLLVIIASNAGWLTFPGIWRSAVTAPLAVLLALGISLFASAPTP
KHLLGLTIWHPVTDAPGTNVVARPGADDQDLG