Protein Info for SGL_RS10340 in Synechocystis sp000284455 PCC 6803

Annotation: AGE family epimerase/isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 PF07221: GlcNAc_2-epim" amino acids 36 to 370 (335 residues), 287.7 bits, see alignment E=7.3e-90

Best Hits

KEGG orthology group: K01787, N-acylglucosamine 2-epimerase [EC: 5.1.3.8] (inferred from 100% identity to syn:slr1975)

Predicted SEED Role

"N-acylglucosamine 2-epimerase (EC 5.1.3.8)" in subsystem Sialic Acid Metabolism (EC 5.1.3.8)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.1.3.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (391 amino acids)

>SGL_RS10340 AGE family epimerase/isomerase (Synechocystis sp000284455 PCC 6803)
MIAHRRQELAQQYYQALHQDVLPFWEKYSLDRQGGGYFTCLDRKGQVFDTDKFIWLQNRQ
VWQFAVFYNRLEPKPQWLEIARHGADFLARHGRDQDGNWYFALDQEGKPLRQPYNVFSDC
FAAMAFSQYALASGAQEAKAIALQAYNNVLRRQHNPKGQYEKSYPGTRPLKSLAVPMILA
NLTLEMEWLLPPTTVEEVLAQTVREVMTDFLDPEIGLMREAVTPTGEFVDSFEGRLLNPG
HGIEAMWFMMDIAQRSGDRQLQEQAIAVVLNTLEYAWDEEFGGIFYFLDRQGHPPQQLEW
DQKLWWVHLETLVALAKGHQATGQEKCWQWFERVHDYAWSHFADPEYGEWFGYLNRRGEV
LLNLKGGKWKGCFHVPRALWLCAETLQLPVS