Protein Info for SGL_RS08895 in Synechocystis sp000284455 PCC 6803

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details PF01946: Thi4" amino acids 60 to 97 (38 residues), 27.3 bits, see alignment 1e-09 PF01494: FAD_binding_3" amino acids 60 to 90 (31 residues), 22.4 bits, see alignment (E = 3.2e-08) PF00890: FAD_binding_2" amino acids 61 to 96 (36 residues), 33 bits, see alignment 2e-11 PF12831: FAD_oxidored" amino acids 61 to 103 (43 residues), 27.6 bits, see alignment 9.1e-10 PF01134: GIDA" amino acids 61 to 90 (30 residues), 22.1 bits, see alignment (E = 3.7e-08) PF01266: DAO" amino acids 61 to 94 (34 residues), 37.6 bits, see alignment (E = 9.8e-13) PF13450: NAD_binding_8" amino acids 63 to 132 (70 residues), 58.2 bits, see alignment E=4e-19 PF01593: Amino_oxidase" amino acids 68 to 318 (251 residues), 59.4 bits, see alignment E=2.1e-19 amino acids 432 to 628 (197 residues), 49 bits, see alignment E=3e-16 PF00355: Rieske" amino acids 353 to 408 (56 residues), 40.8 bits, see alignment 8.8e-14

Best Hits

KEGG orthology group: K09879, isorenieratene synthase (inferred from 100% identity to syn:sll0254)

MetaCyc: 66% identical to carotenoid chi-ring synthase (Synechococcus sp. PCC 7002)
RXN-10648 [EC: 1.3.99.40]; 1.3.99.40 [EC: 1.3.99.40]; 1.3.99.40 [EC: 1.3.99.40]

Predicted SEED Role

"Phytoene desaturase (EC 1.14.99.-)" in subsystem Carotenoids (EC 1.14.99.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.14.99.-

Use Curated BLAST to search for 1.14.99.- or 1.3.99.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (650 amino acids)

>SGL_RS08895 FAD-dependent oxidoreductase (Synechocystis sp000284455 PCC 6803)
MTELPPNPNSTVVSRRTALKLLGVGTLGGAIGYSRLAKPQPARYDTDRLDLPQYLSQLKS
VVVVGAGLAGLASAYELSKRGFKVTLLEKSPNLGGKVAGWPIQVGEETFQMEHGFHGFFP
QYYNLKSIVNELAIADNFRSLDFYSLVFKEGYEPEVFRPSHSAFPWNIVDLTISSPNRLR
WGINLTKPAHWQVFRAITGFQIPKSYDQLDSITVSDWVAKGFPKGLYDLYFLPFAKSSLN
APDVLSAGELMQFFHFYFFGNPEGLAFNGTKDDMVTSLVMPMVESIKAHGGQIITEATVS
AINCDQGLIQSLQYVQGDDPVSDVPFTVPRNDLLTQANPGGNVYYGAGDRVYWAKPEGKE
ALSLTCSHQGCTVAKQENGQFICPCHGAVYDADGQVIQGPAKRNLAKFAVKPGSSATEVQ
LVSRTKDKPPAQTLKADYYVLAADVVGMKNLADRLGGDVNPQFVQQVKNLAVADPFAVAR
FWFDQDFEWPHSNFASLSGYRLTDSITLYHRIQNQFIAWAERTGGSVVELHAYCYKEKEF
PTQGDLLATFEQELYEIVPSLATAKLLHRELVNQKNFSGFPPNSYGDRPETETPVANLLF
AGDWVKMPFPCGLMERAISSGLLSANAICHQEGLQRRELLTVMPEGILQI