Protein Info for SGL_RS08790 in Synechocystis sp000284455 PCC 6803

Annotation: carbohydrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 66 to 91 (26 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 87 to 261 (175 residues), 71.1 bits, see alignment E=5.3e-24

Best Hits

KEGG orthology group: K10190, lactose/L-arabinose transport system permease protein (inferred from 100% identity to syn:slr1723)

Predicted SEED Role

"Sugar transport system permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>SGL_RS08790 carbohydrate ABC transporter permease (Synechocystis sp000284455 PCC 6803)
MKHWKTYLVLVLLAIAMLLPLLWLVATALKAPTEDVFGGLGQLLPRQPNLGNFIKVWQDY
PFGRYLFNSVVVSSITVALNLFFCALAAYPLARLNFVGRDMTLAAIVATLMIPFQLIMIP
LYILAVNLGLRNSYVGIIFPSLASAFGIFLLRQAFQGVPKELEEAGRIDGCRELGIWWHI
MIPAIRPALVTLAIFVFIGAWSDFLWPLIVLDQPEYYTLPLGVAQLSSALDFDWRLIAAA
SVIAIAPIIVLFLFVQRYIIPSEASSGVKG