Protein Info for SGL_RS07985 in Synechocystis sp000284455 PCC 6803

Annotation: glycosyltransferase family 39 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 70 to 91 (22 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 151 to 182 (32 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 297 to 316 (20 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details amino acids 350 to 370 (21 residues), see Phobius details PF02366: PMT" amino acids 2 to 225 (224 residues), 179.8 bits, see alignment E=7.4e-57 PF13231: PMT_2" amino acids 50 to 210 (161 residues), 55.6 bits, see alignment E=7.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to syn:slr1820)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (472 amino acids)

>SGL_RS07985 glycosyltransferase family 39 protein (Synechocystis sp000284455 PCC 6803)
MTIFIRVLTLGLYAVADRTEARYAEIGRKMAETGDWITPQIDYGVPFWGKPPLSTWLTAA
SFKVFSVNEFAARLSSFIPILLASYLVYLLAKNKGINYALVSTMILITTLGFFVSSGAVM
TDPALVLGTTLSMVGFWQAYRGESNAGRLWGYLFFVGLAIGLLAKGPIGVVLVFLPLFIW
IIWQRNLPRVWRQLPWIQGILLTALIAVPWYLLAEAKTPGFLDYFIVGEHWKRFVEKGWE
GDLYGSGHAHPYGMIWVYWLLAAFPWSLLTLGLVGKIFWQIKVKQTKLTLPTLDSEWLSY
LLLWTVAPMVFFTPSANILWTYVLPGLPAFALLLTELLFMVWHDQPVNKYLIAPGLLIPL
VFLFALPIVINVANNNSQKYVVEQYQQSCRESVQEPNCQLFYVFNRPYSAEFYSSGKAKK
VEMHEIAAVLNNNNRNYFVIRTDAIKEFPPEIASKLNQVTQYSAYTLFSQTN