Protein Info for SGL_RS07380 in Synechocystis sp000284455 PCC 6803

Annotation: polysaccharide deacetylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01522: Polysacc_deac_1" amino acids 91 to 198 (108 residues), 86.2 bits, see alignment E=8.8e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to syn:sll1306)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>SGL_RS07380 polysaccharide deacetylase family protein (Synechocystis sp000284455 PCC 6803)
MQRRDLFKYGLATGAGAIASYALMGNKPLLAQQSSNRGGKFWPDNIRLPISLSLMFETGS
QPAKGAPTPFGNFTPPPDYYDMPTITWYRYGYTEGVPRILDLLDKYKIKITSHMSGRTVE
MYPDRAKEIVQRGHEAAAHGWDWDNEFNMTAPQERDFIQRNVDIILKVTGQRAVGYNAPG
LRGSVNILTVLNELGFVYHIDDVSRDEPFIVNLNNGKSIMVVPYAVYLNDIRAYEARFFS
SGQYLTELKNSFDRLYEEAAYRRRMMAVTMHDRLQRPEHVYVFEDFLKYVMAKPGVAFMK
KIDIANFALNDPNTIREDIQNVYPNVPNFVPSATS