Protein Info for SGL_RS05900 in Synechocystis sp000284455 PCC 6803

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF00005: ABC_tran" amino acids 37 to 180 (144 residues), 92.7 bits, see alignment E=4.9e-30 PF13304: AAA_21" amino acids 136 to 211 (76 residues), 35.4 bits, see alignment E=2e-12

Best Hits

KEGG orthology group: K01990, ABC-2 type transport system ATP-binding protein (inferred from 100% identity to syn:slr1901)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>SGL_RS05900 ATP-binding cassette domain-containing protein (Synechocystis sp000284455 PCC 6803)
MVENLSKVYPIALKSPGLKGTLQHFWQRRYRQILAVQDISFTIPPGAMVGFLGANGAGKT
TTLKMLTGLIKPSGGKVRVAGFDPFRRQTAFLRRTSLVMGQKQQLIWDLPTLDSLRINGA
IYEIPDQVFEQRLGELSEMLDLTTELKQPVRKLSLGQRMKAELLAALLHHPTVLFLDEPT
LGLDVNAQVAVRRFLQEYNRRYQATVLLTSHYMADITTLCERVLLIHQGQLMYDGDLEAL
VERFSPYRQVAVELSAPIPLEKLQLYGEVESVEGLLVRFLLKRESLTTAIAKLLAELPVS
DLSVSDPPIEEIIGRLFSQGNLDNKL