Protein Info for SGL_RS04265 in Synechocystis sp000284455 PCC 6803

Annotation: calcium-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 PF00353: HemolysinCabind" amino acids 43 to 72 (30 residues), 28.6 bits, see alignment (E = 5.6e-11) amino acids 48 to 81 (34 residues), 31.8 bits, see alignment (E = 5.7e-12) amino acids 57 to 83 (27 residues), 21.3 bits, see alignment (E = 1.1e-08) amino acids 173 to 207 (35 residues), 23.6 bits, see alignment (E = 2e-09) amino acids 191 to 225 (35 residues), 34 bits, see alignment (E = 1.2e-12) amino acids 200 to 234 (35 residues), 30 bits, see alignment (E = 2e-11) amino acids 218 to 252 (35 residues), 28.9 bits, see alignment (E = 4.5e-11) amino acids 227 to 260 (34 residues), 33.2 bits, see alignment (E = 2.1e-12) amino acids 253 to 283 (31 residues), 28.2 bits, see alignment (E = 7.3e-11) amino acids 388 to 417 (30 residues), 17.5 bits, see alignment (E = 1.6e-07) amino acids 419 to 453 (35 residues), 31.9 bits, see alignment (E = 5.3e-12) amino acids 428 to 461 (34 residues), 32.1 bits, see alignment (E = 4.6e-12)

Best Hits

KEGG orthology group: None (inferred from 100% identity to syn:sll1009)

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (591 amino acids)

>SGL_RS04265 calcium-binding protein (Synechocystis sp000284455 PCC 6803)
MALINGTNGNDNNTFAGLFDFRPALIGSIDLSLSPPFVDSDIDDVINGKAGNDILVGLGG
DDILDGGTGADIMFGGSGDDTYYVDNTGDKVGEASAGGGMDSVISSVDYSLNTGPFYLPA
INGLVNNGAALATLGATKYAAYLFLSEPLTRPELTPTFIENLTLTGTAIIGEGNDLDNII
DGNGENNVLSGLGGNDTIRGLGGNDTISGGEGNDLLNGNMGEDSLNGNVGDDTVRGGQGN
DIVRGGQDNDSLYGDLGNDSVFGDLGNDTLYGGDGNDVLDGGTDPGGADTDTADYGTVQD
PVVLPRSITLKGAGDLTLTVEKGPLGSLGIDTLLNIEEVIADGSVDNNTIDFSGADLGIT
INVDLGMQSILISGASSPQSLVKVVNFDNVIGTIGNDIIIGDDQENILDGGKGDDSIVGF
QKNDTLMGGHGNDTLNGRAGNDLIIGGADKDILTGGMGNDLFDYTNLKDSQLGLSWFNVN
LSKVDVITDFTRGEDKFLVQSAPTNNGFFSPAVRHLSVNSILGLGATVLGLATLGQYDAA
QITVGSGSGARTFVAINNGSFGFNPNTDAFIELQNYTGGKLTINDFTTPTA