Protein Info for SGL_RS03825 in Synechocystis sp000284455 PCC 6803

Annotation: ExeM/NucH family extracellular endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1879 PF06977: SdiA-regulated" amino acids 208 to 443 (236 residues), 132.1 bits, see alignment E=5.3e-42 PF00932: LTD" amino acids 570 to 696 (127 residues), 66.8 bits, see alignment 5.2e-22 amino acids 870 to 981 (112 residues), 64.4 bits, see alignment 2.9e-21 PF03160: Calx-beta" amino acids 754 to 865 (112 residues), 31.9 bits, see alignment 3e-11 PF03372: Exo_endo_phos" amino acids 1359 to 1646 (288 residues), 39.9 bits, see alignment E=1e-13 PF07483: W_rich_C" amino acids 1671 to 1768 (98 residues), 128.7 bits, see alignment 2.2e-41 amino acids 1780 to 1876 (97 residues), 116.2 bits, see alignment 1.7e-37

Best Hits

KEGG orthology group: K07004, (no description) (inferred from 100% identity to syn:sll0656)

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1879 amino acids)

>SGL_RS03825 ExeM/NucH family extracellular endonuclease (Synechocystis sp000284455 PCC 6803)
MSNLIITGIIDGPLPGGLPKAIELYVLADIADLSMYGIEAATNGNASTGPEFTLSGSATA
GDYIYVASETSGFNSFFGFNPNFTDGVANINGDDTIILFENGSIVDVFGEIGIDGTGRPW
EHLDGWAYRNNGALPSSTFNASEWTFSGVDALDDDAANVNATATPSWPIASFSAGGTNGL
DLSTYVRIGRYDLPVPTRTVAPPAGSELALEVSAITYNPDTNTLFVLGDEGTAIVEIDKR
GQLISSMTLTAGDFADPEGLTYVGNGQFVLVEERLRQANLFTYAAGGTLSRADVQAVTLG
TTVGNIGLEGVSKDPVTGGFIFVKEVNPQGIFQTTIDFGAGTASNGSPTTQDSSNLFDPA
LLGMTDIADVFALANSSFVSGAIANNLLVLGQEDGRLVEVDRSGNILSELVINADADNPL
SVTNQGFEGVTLDNDGLLYITSESGGGDGNHPQVWVYAPADYVFNNAAPVTVSVANGVNN
LLENANTTSAIKLGNIIIGDDSLGTNTLSLSGADASNFEIVGNGLFLKAGTVLDFSTQSS
YEVTIAVDDATLGNTPDAITTFTLDITNTAGISDLIISEVAPWSSGNSSVGADWFEVTNT
GANAIDITGWKVDDDSASFANASALAGVTNIAPGQSVVFVDGDANTITAFIDLWFGGTAP
AGLAIGTYGGPGLGTGGDAINLFDATGSLITGVTFGSSPSTSPFSTFDNALGNPSVANLS
TVGSNGAFSVIDAGEGVILNGSPGAIAGSVSSNTTVGIAATGATGSENGPTPGEFTILRT
GDTSTALDVTYSISGDAANGTDYAAIDPTTVTIPAGQSQVKISINPIDDVIIESTESIVI
TLTDTANYDVATSASSATVNIEDNDTPITVSRLQITEFMYSGADGEFIEFTNIDTSSVDM
TGWSFSDSGRVAGSVDLSAFGVVQPGESVILTEADAETFRTAWNLPATAKIIGGLSQNLG
RSDEINLYDATGNLVDRLTYGDQDFSGTIRTQNSSGWISADQLADQEIDADWVLSSVDDA
QNSYASTGGDIGNPSIYITGVDPTIVKIHEIQGTGTASPLVNNVVTIEAIVVGDFQDGDG
DISRNLRGFYVQEEDADVDGNVATSEGIFIFENGNFITDVNVGDKVQITGTVDEFFGETQ
IDTITNITVISSGNTLPTAANITLPTAGTTESQGGTPQPDLEAFEGMLVKFTDTLTITEM
FNLDRFNEIKLSQGGRPQQFTQFNDANVAGYGAYREEIGARTITYDDGLSVQNAEISNLD
GFGSSFSTASDIRMGDTINNLTGVLSYQWAGNASSGATWRVRSAVDGTNQFTKVNDRPVT
PENVGGSLKVTGFNVLNYFKTIDLSGVSTAIGQDPRGADTTAEFDRQTDKLVTALLAIDA
DVLGLAELENDFLPGSSGNAIENLVNELNAVAGAGTYNWVNPGTQFLGTDAIAVGLIYKV
SAVSLVGDAAILNTQAFLDPNNTGENRNRPTVAQTFRDLVTGETFTAVVNHFKSKGASGL
TAGDAGNPDSDQNDGQGFWNDTRTKAAQELVTWLNTNPTGVNDSDYLLLGDYNAYAQEDP
IKALESAGYVNLGAQFSGGTNTSYVFDGQTGTLDYAFASASLAAQVTGATEWGINADEAD
ALDYNLDFGRDVNIFDGTVPYRSSDHDPIIVGLNLASPVEPIANEIGVMAENGFFFVLLP
GGDEVQLKFNNQPFASGTFGNWQILEAETVNGINQVLWQNPNLGQIGVWNADSNWNWISS
QTWPTNSFNTLEAEVTFQIDINNDDLLGDRLTTVENQGSTTLLEGILGNYYVQSGDDLTT
PIKYLGEAFDNNLGNWQALAAETVQGVNQVLWQNLNTNQIGVWNSSADWNWISSSVFEAG
SPQAIAQAGIFGVDLNAVI