Protein Info for SGL_RS03605 in Synechocystis sp000284455 PCC 6803

Annotation: cephalosporin hydroxylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF04989: RMNT_CmcI" amino acids 1 to 189 (189 residues), 306 bits, see alignment E=1.3e-95 PF13578: Methyltransf_24" amino acids 16 to 129 (114 residues), 33.9 bits, see alignment E=5.2e-12

Best Hits

Predicted SEED Role

"Cephalosporin hydroxylase" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>SGL_RS03605 cephalosporin hydroxylase family protein (Synechocystis sp000284455 PCC 6803)
MAMQELIWSIQPDLIIETGIAHGGSLIFSASMLELNAISGGPQDAEVLGIDIDIRQHNRE
AIEAHPMVKRISMIQGSSIAPEIIEQVKAKAEGKQKILVCLDSNHTHDHVLAELEAYAPL
TSVGSYCVVFDTVVEDLPDEMFGDRPWGVGNNPKTAVWEYLKTHPEFEIDKSIQHKLLIT
VAPDGYLKRLG