Protein Info for SGL_RS03570 in Synechocystis sp000284455 PCC 6803

Annotation: Uma2 family endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 PF05685: Uma2" amino acids 29 to 171 (143 residues), 76.6 bits, see alignment E=8.2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to syn:slr1612)

Predicted SEED Role

"Membrane GTPase LepA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>SGL_RS03570 Uma2 family endonuclease (Synechocystis sp000284455 PCC 6803)
MSAITAQELEAQMPDASQLLSDEPEMESSLHYMQLLLLVTCLELAWQDRNDFFIGANLTI
YFSRQQLKSHDFRGPDFFLVKNTARKPRKSWVVWEEDGRYPDLIIELLSDSTADTDRHLK
RDLYAERFHTPEYFYFSPDTLELAGFRLDGDKYQPIIPNDQGWLWSKVLGFFLGIEGQEL
RYFTLEGAVLPTPQEAVRIEVDKGMAMVEQERLKAIQAEQDAEQERLKATQAQQDAEQER
LKAIQAQQDAEQERLKAIQAQQDAEQAKAELQKLQDKVRSLGISID