Protein Info for SGL_RS02915 in Synechocystis sp000284455 PCC 6803

Annotation: TM0106 family RecB-like putative nuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 TIGR03491: putative RecB family nuclease, TM0106 family" amino acids 3 to 480 (478 residues), 607.6 bits, see alignment E=8.6e-187 PF13482: RNase_H_2" amino acids 310 to 480 (171 residues), 164.6 bits, see alignment E=9.9e-53

Best Hits

KEGG orthology group: K06860, (no description) (inferred from 100% identity to syn:sll1686)

Predicted SEED Role

"FIG00568153: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (488 amino acids)

>SGL_RS02915 TM0106 family RecB-like putative nuclease (Synechocystis sp000284455 PCC 6803)
MLVTDSLLLDYKRCQRRAYLNTHGSSEERRPERDFLLKLRQESQRHIQEVLEEQFPHYRE
PETPTYLGQERAQETKTLMAQGVDCIYRGCLYHSLPVNLHTDNNGHLPMLELLGHPHLLV
KVPGESRWGPWQYRPVSIQLGRRPKPEYKILAAFYAQLLAVHQGPLPRWVEIILRRGNSY
SVDLLEWLPRFHQTLADCVQTLIHQREPEVFISRQRCNLCHWYDHCYAIAQEQQHLSLVP
GVTPSRYESLQMVGVLTIDSLARLQTQQVAELMGTAIAEQLQQQALALVEKRAMAKEKKV
YPLPRSPVELYFDIEAEPERNLDYLLGVVVVDHGQKTEKFYGFMAKDPEEEGLIWQEFVQ
LIQTYPNAPIYHFSEYERETIKRLGKLYGTPPKVREKILEQCFDLHHYVVNHVICPVESY
SLKSLASWLGFQWRDAQASGDQSVCWYDNWLTTGDRQFLELILRYNEDDCRATWILKDWL
TKFFAGPA