Protein Info for SGL_RS00225 in Synechocystis sp000284455 PCC 6803

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 59 to 80 (22 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details PF20706: GT4-conflict" amino acids 201 to 397 (197 residues), 39 bits, see alignment E=1.3e-13 PF00534: Glycos_transf_1" amino acids 221 to 372 (152 residues), 121.2 bits, see alignment E=8.7e-39 PF13692: Glyco_trans_1_4" amino acids 223 to 363 (141 residues), 121 bits, see alignment E=1.2e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to syn:sll5050)

Predicted SEED Role

"Glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>SGL_RS00225 glycosyltransferase (Synechocystis sp000284455 PCC 6803)
MKVAYLINQYPKISHSFIRREILALEELGVVVERISVRPIAQTDLADEADRQECQRTRAL
LGAGLIPLLGSGLFLAISRLPPWLKTLGLTIQVGRRSHRGLLRHFAYFLEACLLWRWLKA
AGITHIHAHFGTNSTTVAMLCASLGDISYSFTVHGPEEFDRPEAIAIPEKISRARFVVAI
SSYGKSQLYRWCSLADWPKIQVVHCALAADYLQQEITPVPEVPQLVCVGRLCEQKGQLLL
VQAVRQLRDNGIAVKLVLVGDGELRSPIEELIEQYQLEENITITGWASSAMVQQHLLASR
AMVLPSFAEGLPVVIMEAFALGRPVISTYVAGIPELVKPGVSGWLVPPGSIPDLVEAMQS
VLTMSCEQLTAMAAMGQQAVQMDHDVHKEAEKLAQHFHTYASAP