Protein Info for SGL_RS00180 in Synechocystis sp000284455 PCC 6803

Annotation: IS5 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 23 to 40 (18 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details PF13340: DUF4096" amino acids 2 to 66 (65 residues), 94.1 bits, see alignment E=7.5e-31 PF01609: DDE_Tnp_1" amino acids 84 to 238 (155 residues), 97.4 bits, see alignment E=1.5e-31 PF13586: DDE_Tnp_1_2" amino acids 160 to 239 (80 residues), 42.1 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: K07492, putative transposase (inferred from 96% identity to syn:sll1710)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>SGL_RS00180 IS5 family transposase (Synechocystis sp000284455 PCC 6803)
MVEPHLPKAKTGGRKRKTSLREILNAIFYMLRTGCAWRLLPHDFPKWRTVYGYFQQWHED
GTWKKLNRIFREKVRLKAGRNTHPSAGCLDSQSLKKAGTGQETGYDGGKKVNGRKRTILV
DTMGLLLDVVVHGAHRSDHQGLILLGTWFAPLWQCLQVIWTDSTFGGKDFIFWVEHTFGW
TLNVVSKKQGQKGFEVLPRRWVVERTFAWFGRYRRLSKDYEYLPTTSETMLYVAMVHLIL
QRLA