Protein Info for Rv2136c in Mycobacterium tuberculosis H37Rv

Annotation: Possible conserved transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 44 to 46 (3 residues), see Phobius details amino acids 49 to 61 (13 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details TIGR00753: undecaprenyl-diphosphatase UppP" amino acids 6 to 261 (256 residues), 346.6 bits, see alignment E=4.9e-108 PF02673: BacA" amino acids 7 to 262 (256 residues), 263.8 bits, see alignment E=1e-82

Best Hits

Swiss-Prot: 100% identical to UPPP_MYCTA: Undecaprenyl-diphosphatase (uppP) from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 100% identity to mbo:Mb2160c)

MetaCyc: 100% identical to decaprenyl diphosphate phosphatase (Mycobacterium tuberculosis H37Rv)
3.6.1.-

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (276 amino acids)

>Rv2136c Possible conserved transmembrane protein (Mycobacterium tuberculosis H37Rv)
MSWWQVIVLAAAQGLTEFLPVSSSGHLAIVSRIFFSGDAGASFTAVSQLGTEAAVVIYFA
RDIVRILSAWLHGLVVKAHRNTDYRLGWYVIIGTIPICILGLFFKDDIRSGVRNLWVVVT
ALVVFSGVIALAEYVGRQSRHIERLTWRDAVVVGIAQTLALVPGVSRSGSTISAGLFLGL
DRELAARFGFLLAIPAVFASGLFSLPDAFHPVTEGMSATGPQLLVATLIAFVLGLTAVAW
LLRFLVRHNMYWFVGYRVLVGTGMLVLLATGTVAAT