Protein Info for Rv0799c in Mycobacterium tuberculosis H37Rv

Annotation: Conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 TIGR01413: Dyp-type peroxidase family" amino acids 9 to 305 (297 residues), 303.6 bits, see alignment E=1.8e-94 PF04261: Dyp_perox_N" amino acids 9 to 137 (129 residues), 136.7 bits, see alignment E=6.2e-44 PF20628: Dyp_perox_C" amino acids 140 to 304 (165 residues), 211.9 bits, see alignment E=5.1e-67 TIGR04537: encapsulation C-terminal sorting signal" amino acids 322 to 332 (11 residues), 11.5 bits, see alignment (E = 3.3e-05)

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 100% identity to mbo:Mb0822c)

Predicted SEED Role

"Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>Rv0799c Conserved protein (Mycobacterium tuberculosis H37Rv)
VAVPAVSPQPILAPLTPAAIFLVATIGADGEATVHDALSKISGLVRAIGFRDPTKHLSVV
VSIGSDAWDRLFAGPRPTELHPFVELTGPRHTAPATPGDLLFHIRAETMDVCFELAGRIL
KSMGDAVTVVDEVHGFRFFDNRDLLGFVDGTENPSGPIAIKATTIGDEDRNFAGSCYVHV
QKYVHDMASWESLSVTEQERVIGRTKLDDIELDDNAKPANSHVALNVITDDDGTERKIVR
HNMPFGEVGKGEYGTYFIGYSRTPTVTEQMLRNMFLGDPAGNTDRVLDFSTAVTGGLFFS
PTIDFLDHPPPLPQAATPTLAAGSLSIGSLKGSPR