Protein Info for Rv0617 in Mycobacterium tuberculosis H37Rv

Annotation: Possible toxin VapC29. Contains PIN domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 TIGR00028: toxin-antitoxin system PIN domain toxin" amino acids 2 to 131 (130 residues), 122.1 bits, see alignment E=1e-39 PF01850: PIN" amino acids 3 to 121 (119 residues), 54.4 bits, see alignment E=9.6e-19

Best Hits

Swiss-Prot: 99% identical to VPC29_MYCTO: Ribonuclease VapC29 (vapC29) from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

KEGG orthology group: K07064, (no description) (inferred from 99% identity to mra:MRA_0626)

Predicted SEED Role

"SEQ ID NO 15Q W"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>Rv0617 Possible toxin VapC29. Contains PIN domain. (Mycobacterium tuberculosis H37Rv)
VTVLLDANVLIALVVAEHVHHDAAADWLMASDTGFATCPMTQGSLVRFLVRSGQSAAAAR
DVVSAVQCTSRHEFWPDALSFAGVEVAGVVGHRQVTDAYLAQLARSHDGQLATLDSGLAH
LHGDVAVLIPTTT