Protein Info for RS_RS26145 in Ralstonia solanacearum GMI1000

Annotation: type III secretion system effector protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 PF14891: Peptidase_M91" amino acids 16 to 213 (198 residues), 127 bits, see alignment E=5e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS03907)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XSA6 at UniProt or InterPro

Protein Sequence (218 amino acids)

>RS_RS26145 type III secretion system effector protein (Ralstonia solanacearum GMI1000)
MLIQTQYPGFYIATASDNQREADRYAGKVNEALGKIASGRSGDELLRGISSLSATRQRKL
TISEIDSDDDPGTEAVLTRPQIAAYEPSDFRANKRIAKQFARGEVSSEPAGCSAIVNWNP
KTSIKLSRNGSPKRLHKDPKESFAVLAHELIHARHVMAGTSKAWSGDRYNETSEAGQEEL
RAVGLGAYAHAYTGEPTENSIRAEQGLQARSKYKPRNA