Protein Info for RS_RS25280 in Ralstonia solanacearum GMI1000

Annotation: calcium binding hemolysin protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1499 PF01551: Peptidase_M23" amino acids 33 to 137 (105 residues), 46.1 bits, see alignment 6.8e-16 PF00353: HemolysinCabind" amino acids 637 to 672 (36 residues), 30.1 bits, see alignment (E = 5.9e-11) amino acids 665 to 698 (34 residues), 39.9 bits, see alignment (E = 4.9e-14) amino acids 673 to 704 (32 residues), 29.7 bits, see alignment (E = 7.8e-11) amino acids 794 to 827 (34 residues), 27.6 bits, see alignment (E = 3.4e-10) amino acids 829 to 863 (35 residues), 30.3 bits, see alignment (E = 4.8e-11) amino acids 865 to 898 (34 residues), 40.8 bits, see alignment (E = 2.5e-14) amino acids 994 to 1027 (34 residues), 28.4 bits, see alignment (E = 2e-10) amino acids 1029 to 1063 (35 residues), 37.9 bits, see alignment (E = 2.1e-13) amino acids 1065 to 1098 (34 residues), 39.4 bits, see alignment (E = 6.7e-14) amino acids 1194 to 1227 (34 residues), 28.4 bits, see alignment (E = 2e-10) amino acids 1229 to 1263 (35 residues), 36.7 bits, see alignment (E = 4.9e-13) amino acids 1265 to 1298 (34 residues), 41.6 bits, see alignment (E = 1.4e-14) amino acids 1394 to 1427 (34 residues), 23.7 bits, see alignment (E = 5.7e-09) amino acids 1420 to 1454 (35 residues), 32.6 bits, see alignment (E = 9.1e-12) amino acids 1429 to 1463 (35 residues), 34.7 bits, see alignment (E = 2.1e-12) amino acids 1446 to 1481 (36 residues), 38.6 bits, see alignment (E = 1.3e-13) PF06594: HCBP_related" amino acids 742 to 784 (43 residues), 57.3 bits, see alignment (E = 1.9e-19) amino acids 942 to 984 (43 residues), 56.1 bits, see alignment (E = 4.3e-19) amino acids 1142 to 1184 (43 residues), 55.7 bits, see alignment (E = 5.8e-19) amino acids 1342 to 1384 (43 residues), 46 bits, see alignment (E = 6.4e-16)

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0249)

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2T5 at UniProt or InterPro

Protein Sequence (1499 amino acids)

>RS_RS25280 calcium binding hemolysin protein (Ralstonia solanacearum GMI1000)
MPFNDAMNTVLPPQNGTPPHVTGNYGENRPSGPHGGTDFNYQGGQTGINMTNPTIYSPIS
GTVTYIGGQYGTIKIRDAQGNSHEILHTNSQSVQVGQQIDAGAPIGTMGGRGPNGANQYA
QHVHYQMKDPQGLRINPQDWWDGNDDEGGDGVGGDGVGGDGDGSGAAGGTGEGGANAGAA
GTTPPRRDPLVLDLDGDGIETTSTRNGVVILFDHDGDGVKTGTGWVMPDDGWLVLDRNGN
GAIDSGHELFGVDTLKSNGQLAADGFDALRDVDANKDGKIDASDSVFFNLRIWRDLNQDG
ISQANELTTLSANNIVSIGVDSTTVRTDLGNGNIQTAAGTFTRSNGTKGVTGETNGAAAN
LDLLVNTFYRQFVDHVPLTDQAKALPNLRGSGRVRDLSEAISLSTDLGDWVQTYAEQTAR
QAQIDRLENFIEKWANTADMKSLKAQADALAANDVKLTYNLTGLTAGTAAFDDFVRKLGI
VERFMGFTYGGANGQARFTPLDASSGNFTVTLAAEQIASISMAYERFKADIYESLLLTTR
LKSFVDTLESDLYSDTLSFSGLESQLAKNASANGLAGIIDLVEFISAYGHRRLAELGWNA
TEFLITQLNRAPDLGAFTEELSSWTVRLAAPTEHNLTGTSRPDLLVGTNAADYLYGRDGN
DVLVGKEGNDNLYGGAGNDTLEGGAGNDYLVGNEGSDTYVFNSGWGQDTIYNYDTTAGRS
DVIEFGSGIAATDVIATRSGDDLILSLRNGTDKVTVQSYFNSDATGPYRIDQVRFADGTS
WDVAAVKTLVQAPTSGTDNLYGYASDDTLNGLDGNDTLRGYGGNDTLRGDAGADNLFGGD
GNDMLDGGDDNDYLYGEAGDDSLLGGSGNDNLYGGAGNDTLEGGAGNDYLVGNEGSDTYV
FNSGWGQDTIYNYDTSTGRSDVIAFGDGIAASDIVATRSGDDLILSLRNSSDRVTVQSHF
NSDATGPYRIEQVRFADGTSWDVAAVKALVQAPTSGADNLYGYASDDTLNGLDGNDTLRG
YGGNDTLRGDAGADTLYGGDGNDSIDGGADNDYLYGEAGDDRLLGGSGNDTLYGGNGNDT
LEGDAGNDYLVGNEGSDTYVFNSGWGQDTLYNYDTSSGRSDVIEFGTGIAASDIVATRSG
DDLILSLRNSSDKVTVQSYFYSDATGPYRIDEVRFADGTSWDVAAVKTLVQAPTSGADNL
YGYASDDTLNGLDGNDTLRGYGGNDTLRGDAGADTLYGGDGNDSIDGGADNDYLYGEAGD
DHLLGGSGNDTLYGGNGNDTLEGGAGNDYLVGNEGSDTYVFNSGWGQDTIYNYDTSSGRS
DVIAFGDGIAASDIIATRSGDDLILSLRNSSDRVTVQSYFYSDATGPYRTDLVRFADGTS
WDVAAVKALVLVPTSGADNLYGYASDDALNGLDGNDTIRGYGGNDTLRGDAGADNLFGGD
GNDVLDGGADNDYLYGEAGDDSLQGGAGTDTLYGGNGNDTLEGVKRSLKLIQIQVQTHL