Protein Info for RS_RS24885 in Ralstonia solanacearum GMI1000

Annotation: hemagglutinin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1304 PF05662: YadA_stalk" amino acids 112 to 154 (43 residues), 31 bits, see alignment (E = 8.2e-11) amino acids 193 to 236 (44 residues), 32.7 bits, see alignment (E = 2.5e-11) amino acids 304 to 345 (42 residues), 29.9 bits, see alignment (E = 1.9e-10) amino acids 415 to 458 (44 residues), 34 bits, see alignment (E = 9.4e-12) amino acids 526 to 569 (44 residues), 32.5 bits, see alignment (E = 2.8e-11) amino acids 637 to 678 (42 residues), 29.9 bits, see alignment (E = 1.9e-10) amino acids 748 to 791 (44 residues), 32.6 bits, see alignment (E = 2.7e-11) amino acids 859 to 903 (45 residues), 35.3 bits, see alignment (E = 3.6e-12) amino acids 990 to 1024 (35 residues), 36.8 bits, see alignment (E = 1.3e-12) amino acids 1053 to 1090 (38 residues), 43 bits, see alignment (E = 1.5e-14) amino acids 1174 to 1197 (24 residues), 36.4 bits, see alignment (E = 1.7e-12) PF05658: YadA_head" amino acids 932 to 958 (27 residues), 21.1 bits, see alignment (E = 9.4e-08) amino acids 1102 to 1128 (27 residues), 22 bits, see alignment (E = 5e-08) amino acids 1132 to 1156 (25 residues), 25.7 bits, see alignment (E = 3.4e-09) PF03895: YadA_anchor" amino acids 1246 to 1304 (59 residues), 62.4 bits, see alignment 1.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS02177)

Predicted SEED Role

"Autotransporter adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XPL8 at UniProt or InterPro

Protein Sequence (1304 amino acids)

>RS_RS24885 hemagglutinin (Ralstonia solanacearum GMI1000)
MPQYACAEMLLQNDPGTNCGSVGDAYAWARGDGYSGCKVGYEAAKNLAKGTAFGNSLGQL
SPGTNILVYGSTLRAGMNDEVTPLDSMNIGGHLDVWGASGFHGGVDMNNSAIKNLADGTL
SATSTEAVTGRQLNATNTNITNLQNSIKSISSSASLVQQSAAGKDITVAKDLDGDAVDFS
GKKLSDSTTFSRKLTGVAEGTLSATSTDAVSGKQLYTTNQNLSTTNQNLADTNKSLAETN
KNVSATTTNITNLQNTIKNISGGSAGLVQQSAAGKDITVAKDLDGEAVDFSGKKLSDSTT
FSRKLTGVAEGTLSATSTDAVSGKQLYTTNQNLASTNKDLANTNTRLTTAEGNLSSNTTS
ITNLQNTIKNISGGSAGLVQQSAAGKDITVAKDLDGDAVDFSGKKLSDSTTFSRKLTGVA
EGTLSATSTDAVSGRQLYTTNQNLSTTNQNLADTNKSLAETNKNVSATTTNITNLQNTVN
NISSGSAGLVQQSAAGKDITVAKDLDGDAVDFSGKKLSDSTTFSRKLTGVAEGTLSATST
DAVSGKQLYTTNQNLSTTNQNLADTNKSLAETNKNVSATTTNITNLQNTVNNISSGSAGL
VQQSAAGKDITVAKNLDGDAVDFSGKKLSDSTTFSRKLTGVAEGTLSATSTDAVSGKQLY
TTNQNLASTNKDLANTNTRLTTAEGNLSSNTTSITNLQNTIKNISGGSAGLVQQSAAGKD
ITVAKDLDGDAVDFSGKNLSDSTTFSRKLTGVAEGTLSATSTDAVSGKQLYTTNQNLSTT
NQNLADTNKSLAKTNNNVSATTTNITNLQNTVNNISSGSAGLVQQSAAGKDITVAKDLDG
DAVDFSGKKLSDSTTFSRKLTGVAEGTLSATSTDAVSGKQLYATNQNVSKLSANVTDVSD
SVTNIKNTMNTIVNGGGLKYFHANSTLDDAQAMGLESIAFGGAAVAAGMNSMAMGGNARA
VAGNAVALGAGSVADRANTVSVGSAGKERQITNVAAGTADTDAVNVAQLKAAGIINGSGR
TNATVTYGTNADGSADYGNVTLGGGNAPAGTAIHNVAAGTAETDAVNVRQMNAAIASVQK
VSNTNDPMFAADGDRAVKRASAKGTHATAMGAAASAGGDQSVATGHNAQSGGDSSVAMGA
NAKATANHAVAVGSGSVANRANTMSVGSAGSERQITNVAAGVQGTDAVNVSQLSQAVYAA
VGDLPAGTTARQYTDEQIGMVRQGISQVARGAYSGIAAATALTMIPDVDQGKSIAIGIGS
ATYKGYQAVALGASARISHNLKAKMGVGYSSEGTTVGMGASYQW