Protein Info for RS_RS24455 in Ralstonia solanacearum GMI1000

Annotation: virulence factor family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details PF06057: VirJ" amino acids 411 to 597 (187 residues), 272 bits, see alignment E=3.2e-85 PF01083: Cutinase" amino acids 455 to 517 (63 residues), 29.9 bits, see alignment E=5.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS04798)

Predicted SEED Role

"FIG00977539: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XPW5 at UniProt or InterPro

Protein Sequence (604 amino acids)

>RS_RS24455 virulence factor family protein (Ralstonia solanacearum GMI1000)
MTEHKPRAVFAREGEQCAMQRPRRAALGWMAAACLAVTPWAQAGAAATPGALALVATAAP
PRPAPVQGPVLVPPVGLAGASGVTAVSTTGDAPPRLQMSAPAVTANKAANGGVLSLPVVA
PATPAAAPGAVEFVTHGRFRDVPVYKPTGEVRSVVLMLSGDQGWTSATSRMAQSLAAQGA
LVAGLSTPALFASLEADLGDCAFPDGDLENFSRFLQAYEKVPGYYPPILVGDNEGGALAY
AMIAQARPNIFAAAMSLEFCPVLELRKPLCKGEGVHFSRRMSESRTTAKRVKPKDNAGVV
LLPATRLSAPWVALQSGTLTPFARRSGPLCEARATQTFIETISGAQSVALPAAQPGAPGS
AGVPPVTASEPFKAAFAKLNAQRKPPPPPPPAAVSDLPVIEVAAQPGTSSELFAVLLSGD
GGWAGLDKEVAAALSKSGVPVVGVDSLRYFWTPRTPASAAADMDRLVRFYAARWKKTKAL
LIGYSQGADVLPFIVNRLPAASREHVALAVMMGLGKRADFEFHMTNWVSSSASGLLILPE
VQKLPTGLGMCIYGRDEKDSNCPSLDPKQVQLVKLPGGHHFDGDYAKLARIILEGARGPG
VVAR