Protein Info for RS_RS23760 in Ralstonia solanacearum GMI1000

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 114 to 131 (18 residues), see Phobius details amino acids 143 to 170 (28 residues), see Phobius details amino acids 177 to 195 (19 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details PF03591: AzlC" amino acids 29 to 171 (143 residues), 131.4 bits, see alignment E=1.6e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS02082)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XQB0 at UniProt or InterPro

Protein Sequence (246 amino acids)

>RS_RS23760 branched-chain amino acid ABC transporter permease (Ralstonia solanacearum GMI1000)
MNQAAACAGDHAPRSAAQEARRGLRASLPVLLGFIPFALVLGAQATQKGLSVMEVPLMTG
LNFGGGSEFTAIRLWTSPPHLLLIAAMSLLVNSRHLLMGAALAPYLRHVPRRRALAALFF
MCDESWALALADAQSRATGRISLGYYLGVSAGLYLTWVVFTAIGAALGPVIGDVERYGFD
MAFTAVFLVLLRGMWRGLRASRPWLASLAAAALTYRLMPDGAWYVAAGALAGLACAALTV
PKEARA