Protein Info for RS_RS23525 in Ralstonia solanacearum GMI1000

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 38 to 64 (27 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details PF01810: LysE" amino acids 14 to 201 (188 residues), 91.9 bits, see alignment E=1.9e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS04781)

Predicted SEED Role

"Putative threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XGA2 at UniProt or InterPro

Protein Sequence (206 amino acids)

>RS_RS23525 LysE family translocator (Ralstonia solanacearum GMI1000)
MLPSLTFLFAATLLAITPGPGIAYVVARTVAGGKAEGIASCIGTAVGGTVHVLAAALGLS
LLIAQSALAYSIVKYLGAAYLIYLGIRILASRAQPAALPTIQRAGARKAFRDGVIVEALN
VKTAMFFLAFIPQFVTAGHGFALQFIVLGTTCVALNTAVDLLAVSAASRFVASGTVRAAR
ERLLSRVSGVTMLSLGVLVAVANRER