Protein Info for RS_RS22820 in Ralstonia solanacearum GMI1000

Annotation: IS5/IS1182 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 transmembrane" amino acids 300 to 315 (16 residues), see Phobius details PF05598: DUF772" amino acids 51 to 126 (76 residues), 79.4 bits, see alignment E=2.4e-26 PF01609: DDE_Tnp_1" amino acids 138 to 312 (175 residues), 126 bits, see alignment E=2.6e-40 PF13612: DDE_Tnp_1_3" amino acids 143 to 248 (106 residues), 27.7 bits, see alignment E=3.8e-10

Best Hits

Swiss-Prot: 53% identical to INSH5_ECOLI: Transposase InsH for insertion sequence element IS5Y (insH5) from Escherichia coli (strain K12)

KEGG orthology group: K07481, transposase, IS5 family (inferred from 100% identity to rso:RSp0206)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>RS_RS22820 IS5/IS1182 family transposase (Ralstonia solanacearum GMI1000)
MKKQTSFSEAEYAGKKRVTKRERFLAEMEKVVPWTRLVAAVEPHYPKGERGRPPIGLQRM
LRIYFLQQWYGLSDEGLEDALYDSMAMRAFAGIDLAVENVPDATTLLKFRRLLVEHDLTG
KLFDEIGIMLCERGLMMREGTIVDATIIEAPPSTKNAEKSRDPEMHQTKKGNEWHFGMKA
HIGVDASSGLVHSVVGTAANESDVSQAHALLHGHEEDAFGDAGYTGVEKRDEMQGKGTKW
HVALKRSKIKAMRDGAIKDLLIAAERTKAQIRARVEHPFHVIKNLFGHRKVRYKGLAKNT
AQLFSLFGLANLVLARSQLLASPESIPS