Protein Info for RS_RS22760 in Ralstonia solanacearum GMI1000

Annotation: choline dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1150 PF00732: GMC_oxred_N" amino acids 85 to 292 (208 residues), 44.7 bits, see alignment E=2.3e-15 PF05199: GMC_oxred_C" amino acids 486 to 553 (68 residues), 51 bits, see alignment 3.6e-17 PF00561: Abhydrolase_1" amino acids 838 to 947 (110 residues), 29.9 bits, see alignment E=7.1e-11

Best Hits

KEGG orthology group: K03333, cholesterol oxidase [EC: 1.1.3.6] (inferred from 100% identity to rso:RS05823)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.3.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XQQ4 at UniProt or InterPro

Protein Sequence (1150 amino acids)

>RS_RS22760 choline dehydrogenase (Ralstonia solanacearum GMI1000)
MVRIATPLSEIKEHYDIVVIGSGYGGGIAASRMARAGRTVCLLERGREIIPGEYPNTLAE
ATEEFQVHHPDGHIGSRTGLYDLHVNAQQNVVVGCGLGGTSLINANVSLEPEPQVFEDPR
WPRHVREHADTLLKEGFARAREMLRPTPYPGTAAALPKLQANEKSASQMQAPHTFYRPPI
NVTFDDLPDNRNHVGVEQLRCNDCGDCVSGCNNKAKNTTLMNYLPDASNHGAEIFCQASV
RYLERDGDGWIVHYQYVGTGREAFDAPTLFVKANIVVLSAGTLGSTEILLRSRTQGLLLS
EKLGKHMSGNGDILGFGYNNNDKINGIGFGAHSGKGIGPVGPCITSIIDMRDEKDWTQRM
VIEEGSIPGALGRAIVPAMAAASTQIGRPTSTGVAAKIAHAAREVESAVLGPYYGAVNRL
QTYLIMSHDNGAGEMKLDDHDQLRVHWPGVGEQPNFKIGNDRLYDATRALGGTYVPNPIW
TDLFKHSLITVHPLGGCVMGEDAAQGVVNHKGQVFSSASGSDVYPGLYVTDGSVIPTSLA
VNPLLTISAVSERTMALLAQDRGWKIDYTLPSAPSKPARPVKPGIEFTEAMKGYVSLAHR
QAQGTDPAVYEAAYQAGKDAGSTMAFIVTIRSDDLDQLIANPQHPATIVGTLNAPALSAR
PLTVSHGVFNLFEAFPEQVGVRHMNYNMALTAEDGKEYFFSAFKSVPSDHSVLRAWADTS
TLYVTVYDGTDNTGPVVGSGVLHIEPADFAKQMTTMKVLNASGEAERLKDLARFGKYFAG
VLWESYGGVLAGNAYFNPDAPPRKKRPLNAGAPEVLFFQTEDNVTLRLTRFQGGSKGPVM
LVHGLGVGSNIFSTDTIATNLLEFLYQHGYDVWLLDFRVSILLEASRQQCDGDQIARYDF
PAAIDRIRQATGADDVQCVVHCYGATTFFMSLLAGLQGVRSVVCSQIATDIVVPPATAAK
TGLHIPSVLDKLGVKSLTAYTQANADWLEKLYDTALKGYALVEAQGYCNNPVCHRITFMY
ASLYRHETLNESLHDNLHELFGVANMRTMEHLALMCRTGHLVGFGGEDIYMPHLDRLQLP
ILFISGAQNECYLPESTRRTYQQLVDRFGPERYSRLVIPGYGHIDCMFGKNAAMDVYPAI
LAHLDKTASA